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Saturday, December 31, 2011
Chirping Perch Reminds You Of a Forgotten Charger [Accessories]
Friday, December 30, 2011
Video: GOP candidates trade shots
>>> the republicans are descending on their stake for pitching to voters in iowa . peter alexander is there. good morning.
>> reporter: good morning. mitt romney the former governor of massachusetts will begin his day with a breakfast meet and greet. consider this statistic. a recent poll shows nearly 40% of likely republican caucus goers in iowa are not firmly set on a candidate which is why what happens here next tuesday is largely unpredictable and why the presidential candidates are once again crisscrossing the state. arriving in iowa late tuesday before a standing room only crowd, mitt romney ignored his republican rivals. instead launching a fierce attack on president barack obama .
>> gone is the hope and change candidate of davenport. gone is the candidate who would heal the nation.
>> reporter: earlier tuesday in new hampshire, romney mocked newt gingrich for his failure to get on the ballot in gingrich 's home state of vrnl.
>> virginia.
>> i think he compared that to what, pearl harbor ? it's more like lucille ball at the chocolate factory . i mean, you got to get it organized. despite romney 's efforts to act like the presumptive nominee the race in iowa remains wide open .
>> what the people of iowa want is an inspiring candidate. they want somebody who can get them enthusiastic, who can get them engaged.
>> reporter: since this summer, seven different republicans have led in the polls here. one of the recent gop front-runners, gingrich , the former house speaker , now appears to be losing momentum, in part due to a bare-fisted blitz of negative ads targeting his congressional record . to combat that assault, gingrich 's supporters launched their own new ad tuesday.
>> when a principal conservative took the lead they attacked him with falsehoods.
>> reporter: still another sign of trouble, conflicting stories with the end of his first marriage. on his campaign website gingrich claims his first wife asked for the divorce but court documents suggest gingrich himself requested the split. romney was also on the defensive tuesday trying to shake his moderate record, as conservatives attacked him on the issue of abortion, launching a new text message campaign, citing his past pro-choice views. and with ron paul demonstrating steady support, the biggest battle here may be over which candidate comes the conservative choice.
>> of all of the candidates that are running i am the one with the unassailable proven track record of a clear 100% consistent conservative.
>> reporter: michele bachmann , rick santorum and rick perry , stumping tuesday with controversial sher imjoe arpaio are all vying to earn that title. the slugfest continued into the night with mitt romney being attacked by newt gingrich who called him a big government moderate. newt gingrich also attacked ron paul saying he couldn't vote for paul if he became the romney . "his views totally outside the main stream of every decent american."
>> exander in iowa , thank you very much.
Source: http://video.today.msnbc.msn.com/today/45803586/
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Opposite sides of the stadium: Family football rivalries
Husbands and wives can find themselves on opposite sides of the collegiate football divide.
STORY HIGHLIGHTS
- Collegiate bowl season can divide couples because of their school loyalties
- One couple will sit on opposite sides of the stadium for the Chick-fil-A Bowl
- Football conference rivalries also cause family members to clash
(CNN) -- On New Year's Eve, husband and wife Tripp and Jessica Johnson will be wearing orange and blue and cheering their team in the Chick-fil-A Bowl -- from opposite sides of the stadium.
The games features the Auburn University Tigers facing off against the University of Virginia Cavaliers, and both schools happen to share an orange and blue color scheme. Jessica went to Auburn, and Tripp is a UVA alum.
The two first met in neutral territory, New York, when they both found themselves at a place known as the "Auburn Bar" to watch a game. Jessica went by choice, but Tripp was tagging along with a friend.
Usually, this difference doesn't turn Jessica and Tripp from couple to rivals. The two football teams have played one another only two previous -- in 1997 and 1998. But for two passionate football fans that are true to their schools, the bowl is turning theirs into a house divided.
With bowl season in full swing, there will definitely be friends and families divided by the Rose, Orange, Sugar and Fiesta bowls and ultimately the BCS National Championship Game. No rivalry is worth starting a long-standing feud in the family, but it's fun to get into the spirit of collegiate loyalties.
Because of the holidays and his dad's 60th birthday, Tripp's family is coming to town for the game. All of Tripp's siblings also went to UVA, so they bought tickets for the whole family. Jessica responded in kind by buying tickets so she can sit with her family on the Auburn side of the stadium.
"Neither of us are very good losers," she said. "And that can make people pretty miserable."
No need for tensions and loyalties to clash on the father-in-law's birthday.
If Virginia wins, her husband will bring it up "forever." "If Auburn wins, I'll be a little mean that night, but Auburn really should beat them," she said. "If they don't, I'll be embarrassed."
Get the latest college football news with Sports Illustrated
Betsy Glenday and her husband, Nigel, have also had some "jabbing back and forth." As it happens, Betsy and Jessica are friends, and both of them happened to marry men who went to the University of Virginia.
But the biggest difference is Betsy's husband loves Auburn, and the two always watch Auburn games together. They may not be able to watch the bowl game, however, because the couple will be vacationing in Paris.
When they found out the two schools would play one another in the bowl, they had already booked their trip.
Betsy said there was no way they would change their tickets for a bowl game. But if they did, the couple would wear orange and blue, sit together, and her husband would probably bring a "back-up Auburn hat," just in case.
While Betsy doesn't have to worry about a football rivalry in her marriage, she is familiar with a house divided by an even deeper challenge: Auburn and the University of Alabama. Betsy's family enjoys the excitement of a good, long-standing rivalry, but never lets it go too far.
Growing up in Alabama, her family watched all of the 'Bama games. But when Betsy was accepted to Auburn, things began to change. Her brothers followed suit, and soon Betsy, her father and her siblings were on the orange and blue side of the divide, while her mother and grandfather swore by the Crimson Tide.
In the Southeastern Conference, rivalries divide houses and run deep in family blood. Auburn and Alabama play each other every year in the Iron Bowl -- the week of Thanksgiving.
So each year, Betsy's mother goes the Alabama alumni bar to watch the game, while Betsy, her brothers and father go to the Auburn alumni bar. During halftime, whoever is losing has to visit the other bar and "eat it" for a little while.
"It may be Thanksgiving, but I'm going to talk back to my mom!" Betsy said, laughing.
Family will still be family, tensions will ease after the Iron Bowl, and the jokes and jabbing will be swapped in good fun.
Because Virginia and Auburn have conflicting game times during the regular season, Jessica and Tripp managed to find a bar near their home in San Francisco that would broadcast both. As Jessica watched Auburn lose to the University of Georgia this year, Tripp was enjoying a game of UVA vs. Duke University.
He invited her to come watch his game because Virginia was faring well.
Despite Auburn's possible defeat, Jessica let him know that she "didn't care about his stupid game."
If bowl season, or a good old-fashioned conference rivalry, is attempting to divide your house, Jessica has some tips for how "not to kill each other."
"Just have fun with it, and maybe go to separate places to watch the game if possible. But I'll tell you this, I wouldn't watch any games with him if he went to Alabama."
Source: http://www.cnn.com/2011/12/28/living/couples-house-divided-football/index.html?eref=rss_us
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Thursday, December 29, 2011
Most Popular Android Apps and Posts [Best Of Lifehacker 2011]
2011 was a great year for Android fans, with lots of new and improved apps and the sweet introduction of Ice Cream Sandwich. Here are the most popular Android-related posts and downloads.
The Always Up-To-Date Guide to Rooting Any Android Phone
With all the different devices out there running different versions of Android, the rooting process can be a little different for every phone. Here's a one-stop guide that should get you up and running with root access, no matter what device you have. More ?
The 10 Best Android Apps that Make Rooting Your Phone Worth the Hassle
Android phones are spectacular little devices because they're able to so much that others simply can't, but one big snag in that greatness is that many of those best features require that the phones be rooted. More ?
Top 10 Awesome Android Features that the iPhone Doesn't Have
We love both Android and iOS, but the open nature of Android just means it can do things others just can't. Here are our favorite Android apps and features that you won't find on its Apple-clad brethren. More ?
How to Get Better Battery Life from Your Android Phone
If you have a modern Android phone, you know the pain of turning on your phone at 5 PM only to realize it's deep in a low-battery coma. Here are the simple manual changes, and clever automatic tweaks, that will keep your phone awake and useful for far longer. More ?
Lifehacker Pack for Android: Our List of the Best Android Apps
Whether you're an faithful Android user or you've just unboxed your first Android phone, there's a wealth of free and cheap apps in the Android Market that can turn your device into a mobile powerhouse. More ?
Five Ways the Android-Powered Google Tablet Is Better than the iPad
The iPad is easily the best tablet you can buy right now, but that's changing. Google showed off their upcoming tablets today, casting a spotlight on the iPad's shortcomings. More ?
The Best Music Player Application for Android
Android has no shortage of great music apps, but if you're looking for something that'll play nearly any local file, has a powerful equalizer, a handy tag editor, and tons of customization options, look no further than PowerAMP. More ?
Supercharge Your Smartphone This Weekend
Got an Android or iPhone? Want to do more with it? Here are a bunch of little things you can do this weekend to supercharge your smartphone so it can do almost anything you want. More ?
How to Pick Your Next Android Phone: The Specs That Matter (and the Ones That Don't)
Manufacturers are constantly popping out new Android phones, and it can all be a bit overwhelming when it comes time to buy a new phone. Here's how to avoid getting overwhelmed and narrow down your buying decisions. More ?
First Look at the Highly Polished Android 4.0, "Ice Cream Sandwich" [Updated with Video]
Google just unveiled their new Nexus phone, the Galaxy Nexus, along with a preview of Android 4.0 Ice Cream Sandwich, coming to phones next year. Here's a look at the creamy new update to the Android operating system. More ?
Top 10 Ways to Save Money with Your Smartphone
Your smartphone might be an expensive pocket computer, but it can help make up for its high price tag by cutting costs in other ways. Here are our top 10 ways to save money with your smartphone.
10. More ?
Our Biggest Android Annoyances and How to Fix Them
We asked, and, boy, do our readers have some issues with their Android phones. Here's a few of the biggest sticking points, how to fix them, and a few tiny-but-aggravating issues our commenters figured out on their own. More ?
Set Up and Get to Know Your New Android Phone
Sweet robotic joy-you just unwrapped an Android phone and, man, is it shiny. Here are our suggestions for apps to grab, settings to tweak, and really nifty things you can do with your Google-powered mini-computer. More ?
How to Replace Your Wallet with Your Phone
If you like your wallet, by all means, hold onto it. But if you'd like to travel lighter and worry about one less thing to remember, you can put replace most of your wallet's functionality with your phone. More ?
How to Find the Right Android Keyboard for You
Compared to your full-sized desktop keyboard, typing on your phone's tiny software keyboard just plain sucks. Luckily, Android users can choose from a myriad of different keyboards, meaning you can find one that caters to your typing style. More ?
The Best Video Player for Android
Android has more than a few good video players on the Market, but the best we found-in terms of interface, browsing, and playback quality-was undoubtedly MoboPlayer. More ?
So there you have it. It's been a great year for Android, so we've had a lot to write about. Whether your favorite of the year made the list or not, we'd love to hear about your favorite Android post or app in the comments. Happy end of 2011, Android users!
Source: http://feeds.gawker.com/~r/lifehacker/full/~3/SGaXRz22AK4/most-popular-android-apps-and-posts
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LISTEN: Lady Gaga's Naughty Christmas Gift to Fans
Lady Gaga gave her Little Monsters a special gift for Christmas -- but unlike her ABC holiday special, this one is strictly for the grown-ups! Gaga released a brand new song, "Stuck On F***ing You," via YouTube on Christmas Eve. The naughty, partially improvised tune celebrates the touring life of sex, drugs and rock 'n roll. Listen below (but not at work)!
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Wednesday, December 28, 2011
Video: Teen climbs highest mountains on 7 continents
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Source: http://www.msnbc.msn.com/id/21134540/vp/45790078#45790078
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New Florida Atlantic coach Carl Pelini talks staff, recruiting and other topics
Carl Pelini had his first sit down with the media since taking over at Florida Atlantic two weeks ago.
Here are some of the highlights:
* Pelini has hired three coaches, DC Marvin Sanders, secondary coach Ross Watson and Jeff Sims, who will coach an offensive position yet to be determined. He said he the rest of the staff will fall into place once an offensive coordinator is hired. He has spoken to four candidates and hopes to hire one soon.
* On Sanders, Pelini said: ?What it allows me to do is to be a head coach. I?ll still have some involvement with the defense, to not feel like I have to micro manage things over there. I got a guy over there I trust, knows the system. It will allow me to be a head coach, which was my vision, to have involvement on the defense, on the offense, special teams, recruiting. I didn?t want to be a coordinator I wanted to be a head coach. Hiring Marvin was just huge for that.?
* The Owls will return to a 4-3 base defense after switching from a 4-3 to the 3-4 for 2010. Pelini said he did use a three-man front at Nebraska but more as a pressure package on third down.
* Pelini said a coach or two could come from Howard Schnellenberger?s staff. The best bet is Jared Allen, who has been recruiting in Palm Beach County and has been going on the road with Pelini.
* On the reception from the local high schools, Pelini said: ?Very good. We got out and hustled in a lot of schools. The high school coaches are telling me the same thing I believe that there?s great potential here. Our visit weekends in January are filling up fast. We got kids who want to come see what we?re all about. We?ve had some unofficial visits, mid-year kids, junior college kids, really working hard in that respect.?
* Pelini is excited about the recruiting class, one that including three oral commitment from Palm Beach County players: American Heritage RB Jeremy Gaskins, Forest Hill athlete Mikey Bullard and Atlantic receiver Chad Ward.
* Pelini said he?s brought in a lot of kids on unofficial visits. ?That?s going to be a huge part of this process is to sell them on the opportunity to sell them. But that?s what having such a great local recruiting base gives you an opportunity to do.?
* On bringing in Junior College players, Pelini said: ?That is part of the evaluation process. You look at your team and evaluate where you are. We are not going to be a junior college based football team. What you do is look at potential junior college recruits and say, ?Could this guy come in and help us immediately?? The last thing you ever want to do is bring in a bunch of junior college players who can?t play for you right away.?
* Don?t make the mistake of mentioning the Owls were 1-11 this season. ?I made it clear to my players that that is history. I don?t think of this as a 1-11 team. This is the next year?s team. We are going to approach it as winners and with that philosophy. The 1-11 is gone.?
* Pelini once again said he is coming in with a wrecking ball. ?I plan on improving every aspect. Everything is being evaluated. Strength program, conditioning program, academic side, football specific, everything is going to be different. Not commenting on the last staff, it is going to marry my philosophy. For me it is a matter of changing the entire culture. In order to do that, you just can?t start making quick decisions.?
Tags: Carl Pelini
This entry was posted on Tuesday, December 20th, 2011 at 12:57 pm and is filed under Football, Tom D'Angelo. You can follow any responses to this entry through the RSS 2.0 feed. You can leave a response, or trackback from your own site.
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Tuesday, December 27, 2011
Sony, Samsung dissolve panel joint venture
TOKYO (AP) -- Japan's Sony and South Korean rival Samsung are dissolving their joint venture in liquid crystal display panels as Sony tries to stanch years of losses in its TV business.
Sony Corp. said Monday that Samsung Electronics Co. will buy all of Sony's shares in the joint venture for about 1.08 trillion Korean won ($935 million) subject to a final agreement.
The joint venture called S-LCD was set up in 2004. Sony, which fell behind in flat panel TVs, invested in a Samsung panel factory to ensure a steady supply of panels for its LCD TVs.
Sony's TV operation has lost money for seven straight years and the company is straining to return that key business to profit.
The prices of TVs as well as panels have been dropping so it makes more sense to buy panels at the market rate than to invest in production.
Sony, which makes Bravia TV sets, does not make its own LCD panels.
It said it will enter a new partnership with Samsung to buy panels, and will also continue buying panels from other manufacturers.
Sony said it will suffer a loss of 66 billion yen ($846 million) for the third quarter of this fiscal year, which ends later this month, because of the declining value of investment in S-LCD.
Getting out the production venture will produce substantial savings after January 2012, when the deal is completed, according to Sony.
It was still unclear how Sony's profit forecast for the fiscal year through March 2012 will be affected, said company spokesman Takashi Uehara.
---
Follow Yuri Kageyama on Twitter at http://twitter.com/yurikageyama
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Friday, December 23, 2011
Cuba keeps lid on travel; 2,900 prisoners to go free
HAVANA?? President Raul Castro on Friday put on ice highly anticipated plans to ease travel restrictions on Cubans, telling lawmakers the nation would not be pressured into moving too fast and citing continued aggression from the United States as the reason for his cautious approach.
He did, however, announce that Cuba will free 2,900 prisoners, including some convicted of political crimes. The amnesty timed ahead of a spring visit by Pope Benedict XVI will not include a jailed American, Alan Gross, whose case has become a sticking point between Havana and Washington.
Cuba has been awash in speculation the much-hated travel regulations, which prevent most Cubans from leaving the island, might be lifted during Friday's session of the National Assembly. But Castro said the time still wasn't right, despite a year of free-market reforms that has seen the Communist government legalize a real estate market and greatly increase private business ownership.
"Some have been pressuring us to take the step ... as if we were talking about something insignificant, and not the destiny of the revolution," Castro said, adding that those calling for an end to the travel restrictions "are forgetting the exceptional circumstances under which Cuba lives, encircled by the hostile policy ... of the U.S. government."
Castro criticized U.S. President Barack Obama, saying he was the 11th American president since the 1959 revolution led by his brother Fidel, and appeared "not to understand" the sacrifices Cuba had made in its struggle for independence and sovereignty, including the Bay of Pigs invasion and the Cuban Missile Crisis, as well as Washington's 49-year trade and travel embargo.
"Sometimes, he (Obama) gives the impression he has not even been informed of this reality," Castro said, repeating his willingness to normalize relations with the U.S. under the right conditions.
Amnesty for prisoners
Before Castro's speech, the Council of State agreed to release the prisoners, among them inmates who are more than 60 years old or are ailing, women and young people who don't have long criminal records, the island's Prensa Latina news agency reported.
It said those convicted of serious crimes like murder, espionage or drug trafficking would not be part of the amnesty, though it added that some people convicted of political crimes were on the release list.
"Some people condemned for crimes against state security will be freed," read an official government communique cited by Prensa Latina. "All of them have completed an important portion of their sentence and shown good behavior."
The government did not directly link the release with the Pope's visit, but said the prisoners would be freed after "numerous" requests by family members and religious institutions.
American not included
Gross, a 62-year-old American government subcontractor, was arrested in 2009 and sentenced to 15 years in jail for crimes against the state.
Gross's family concedes he was on a USAID funded democracy building program, but insists his goal was simply to help the island's tiny Jewish community gain better access to the Internet. Cuba says the programs seek to overthrow the government.
Gross's supporters have appealed to Raul Castro for a humanitarian release. They say Gross ? who was obese when he was arrested ? has lost more than 100 pounds in jail and is now gaunt and increasingly depressed. Meanwhile, his daughter and elderly mother have both been diagnosed with cancer.
Reuters and The Associated Press contributed to this report.
Source: http://www.msnbc.msn.com/id/45780574/ns/world_news-americas/
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Thursday, December 22, 2011
Video: Five Killed in Small Plane Crash
CNBC's Brian Shactman has the details on a plane crash in New Jersey, that killed all five aboard; an ITC judge ruled Motorola infringed Microsoft's patent; and an advisory board is asking two scientific journals not to publish details of certain bio-m...
Source: http://video.msnbc.msn.com/cnbc/45744906/
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Sunday, December 18, 2011
Death toll in Philippine floods rises to 436 (AP)
MANILA, Philippines ? Pounding rain from a tropical storm swelled rivers and sent walls of water crushing into two southern Philippine cities in the thick of night, killing at least 436 people, many caught in their beds, officials said Saturday.
Philippine Red Cross Secretary General Gwen Pang told The Associated Press that the latest toll was based on a body count in funeral parlors. She said that 215 died in Cagayan de Oro and 144 in nearby Iligan, and the rest in several other southern and central provinces.
Most of the dead were asleep Friday night when raging floodwaters tore through their homes from swollen rivers and cascaded from mountain slopes following 12 hours of pounding rain in the southern Mindanao region. The region is unaccustomed to the typhoons that are common elsewhere in the archipelago nation.
Many of the bodies in parlors were unclaimed, indicating that entire families had perished, Pang said.
The number of missing was unclear Saturday night. Before the latest Red Cross figures, military spokesman Lt. Col. Randolph Cabangbang said about 250 people were still unaccounted for in Iligan.
Thousands of soldiers backed up by hundreds of local police, reservists, coast guard officers and civilian volunteers were mobilized for rescue efforts and to clean up after the massive deluge that left the two coastal cities strewn with debris, trash, overturned vehicles and toppled trees.
Many roads were cut off and there was no electricity, hampering relief efforts.
Some of the dead were swept out to sea from Cagayan de Oro and Iligan, which are intersected by rivers and flanked by mountains.
Chief of the government's Civil Defense Office Benito Ramos attributed the high casualties in Mindanao "partly to the complacency of people because they are not in the usual path of storms" despite four days of warnings by officials that one was approaching.
Ayi Hernandez, a former congressman, said he and his family were resting in their home late Friday when they heard a loud "swooshing sound" and water quickly rose ankle deep inside his home. He decided to evacuate to a neighbor's two-story house.
"It was a good thing because in less than an hour the water rose to about 11 feet (3.3 meters)," the height of the ceiling of his house, he said.
A man in Cagayan de Oro said he heard a cry for help around 10 p.m. while the floodwaters were still low.
"Suddenly, there was a very strong rush of water," the man, who was not identified, told a local TV station.
The floodwaters were waist-high in some neighborhoods that do not usually experience flooding. Scores of residents escaped the floods by climbing onto the roofs of their homes, Iligan Mayor Lawrence Cruz said.
Those missing included prominent radio broadcaster Enie Alsonado, who was swept away while trying to save his neighbors, Cruz said.
Rep. Rufus Rodriguez of Cagayan de Oro said that about 20,000 residents of the city had been affected and that evacuees were packed in temporary shelters.
Television footage showed muddy water rushing in the streets, sweeping away all sorts of debris. Thick layers of mud coated streets where the waters had subsided. One car was shown to have been carried over a concrete fence.
Authorities recovered bodies from the mud after the water subsided. Parts of concrete walls and roofs, toppled vehicles and other debris littered the streets.
Rescuers in boats rushed offshore to save people swept out to sea. In Misamis Oriental province, 60 people were plucked from the ocean off El Salvador city, about 6 miles (10 kilometers) northwest of Cagayan de Oro, said disaster official Teddy Sabuga-a.
About 120 more were rescued off Opol township, closer to the city, he added.
Cruz said the coast guard and other rescuers were scouring the waters off Iligan for survivors or bodies that may have been swept away.
Tropical Storm Washi dumped on Mindanao more than a month of average rains in just 12 hours.
It quickly cut across the region overnight and headed for Palawan province southwest of Manila on Saturday night.
Forecaster Leny Ruiz said that the records show that storms that follow Washi's track come only once in about 12 years.
Lucilo Bayron, vice mayor of Puerto Princesa in Palawan, said he already mobilized emergency crews but local officials have not ordered an evacuation yet because the weather was still fine.
___
Associated Press writer Hrvoje Hranjski contributed to this report.
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Saturday, December 17, 2011
Patio that transforms into a pool will make a splash with your guests (Yahoo! News)
Here's something that'll fit perfectly within the Bond universe: a patio that transforms into a swimming pool at the click of a button. No need to look any further for something that'll go well with that?fancy morphing table in the?mansion of your dreams.
The pool is equipped with a mechanism that controls its tile cover: Lower it to flood the space with water when you want to swim or lift it up to create room for a summer barbecue with friends. You can even control how deep you want the water to be, which is perfect if you have kids. Pool-loving, belly-flopping grown-ups don't need to worry, though, as it?has a maximum depth of 6'.
Stefan Kanetis came up with the pool's design when his arthritic mother was advised by a doctor to exercise in a body of water. Now,?Stefan's company can customize one for your home ? if you're willing to pay 20% to 30% more than what an in-ground pool will cost you, that is.
Interested? You'll have to contact the company for an accurate quote, but here's a starting point: A typical in-ground house pool?could cost anywhere from $25,000 to $50,000, which can only mean that this patio-pool hybrid requires deep pockets.
[via?Reddit,?TheNextWeb]
This article was written Mariella Moon and originally appeared on Tecca
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Friday, December 16, 2011
Genome tree of life is largest yet for seed plants
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Contact: Kendra Snyder
ksnyder@amnh.org
212-496-3419
American Museum of Natural History
New York Plant Genomics Consortium maps evolutionary relationships, gene functions for 150 species
Scientists at the American Museum of Natural History, Cold Spring Harbor Laboratory, The New York Botanical Garden, and New York University have created the largest genome-based tree of life for seed plants to date. Their findings, published today in the journal PLoS Genetics, plot the evolutionary relationships of 150 different species of plants based on advanced genome-wide analysis of gene structure and function. This new approach, called "functional phylogenomics," allows scientists to reconstruct the pattern of events that led to the vast number of plant species and could help identify genes used to improve seed quality for agriculture.
"Ever since Darwin first described the 'abominable mystery' behind the rapid explosion of flowering plants in the fossil record, evolutionary biologists have been trying to understand the genetic and genomic basis of the astounding diversity of plant species," said Rob DeSalle, a corresponding author on the paper and a curator in the Museum's Division of Invertebrate Zoology who conducts research at the Sackler Institute for Comparative Genomics. "Having the architecture of this plant tree of life allows us to start to decipher some of the interesting aspects of evolutionary innovations that have occurred in this group."
The research, performed by members of the New York Plant Genomics Consortium, was funded by the National Science Foundation (NSF) Plant Genome Program to identify the genes that caused the evolution of seeds, a trait of important economic interest. The group selected 150 representative species from all of the major seed plant groups to include in the study. The species span from the flowering varietypeanuts and dandelions, for exampleto non-flowering cone plants like spruce and pine. The sequences of the plants' genomesall of the biological information needed to build and maintain an organism, encoded in DNAwere either culled from pre-existing databases or generated, in the field and at The New York Botanical Garden in the Bronx, from live specimens.
With new algorithms developed at the Museum and NYU and the processing power of supercomputers at Cold Spring Harbor Laboratory and overseas, the sequencesnearly 23,000 sets of genes (specific sections of DNA that code for certain proteins)were grouped, ordered, and organized in a tree according to their evolutionary relationships. Algorithms that determine similarities of biological processes were used to identify the genes underlying species diversity.
"Previously, phylogenetic trees were constructed from standard sets of genes and were used to identify the relationships of species," said Gloria Coruzzi, a professor in New York University's Center for Genomics and Systems Biology and the principal investigator of the NSF grant. "In our novel approach, we create the phylogeny based on all the genes in a genome, and then use the phylogeny to identify which genes provide positive support for the divergence of species."
The results support major hypotheses about evolutionary relationships in seed plants. The most interesting finding is that gnetophytes, a group that consists mostly of shrubs and woody vines, are the most primitive living non-flowering seed plantspresent since the late Mesozoic era, the "age of dinosaurs." They are situated at the base of the evolutionary tree of seed plants.
"This study resolves the long-standing problem of producing an unequivocal evolutionary tree of the seed plants," said Dennis Stevenson, vice president for laboratory research at The New York Botanical Garden. "We can then use this information to determine when and where important adaptations occur and how they relate to plant diversification. We also can examine the evolution of such features as drought tolerance, disease resistance, or crop yields that sustain human life through improved agriculture."
In addition, the researchers were able to make predictions about genes that caused the evolution of important plant characteristics. One such evolutionary signal is RNA interference, a process that cells use to turn down or silence the activity of specific genes. Based on their new phylogenomic maps, the researchers believe that RNA interference played a large role in the separation of monocotsplants that have a single seed leaf, including orchids, rice, and sugar canefrom other flowering plants. Even more surprising, RNA interference also played a major role in the emergence of flowering plants themselves.
"Genes required for the production of small RNA in seeds were at the very top of the list of genes responsible for the evolution of flowering plants from cone plants," said Rob Martienssen, a professor at Cold Spring Harbor Laboratory. "In collaboration with colleagues from LANGEBIO [Laboratorio Nacional de Genomica para la Biodiversidad] in Mexico last year, we found that these same genes control maternal reproduction, providing remarkable insight into the evolution of reproductive strategy in flowering plants."
The data and software resources generated by the researchers are publicly available and will allow other comparative genomic researchers to exploit plant diversity to identify genes associated with a trait of interest or agronomic value. These studies could have implications for improving the quality of seeds and, in turn, agricultural products ranging from food to clothing.
In addition, the phylogenomic approach used in this study could be applied to other groups of organisms to further explore how species originated, expanded, and diversified.
"The collaboration among the institutions involved here is a great example of how modern science works," said Sergios-Orestis Kolokotronis, a term assistant professor at Columbia University's Barnard College and a research associate at the Museum's Sackler Institute. "Each of the four institutions involved has its own strengths and these strengths were nicely interwoven to produce a novel vision of plant evolution."
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Other authors include Ernest Lee, American Museum of Natural History; Angelica Cibrian-Jaramillo, American Museum of Natural History, The New York Botanical Garden, and New York University currently at the Laboratorio Nacional de Genomica para la Biodiversidad, Mexico; Manpreet Katari, New York University; Alexandros Stamatakis, Technical University Munich currently at Heidelberg Institute for Theoretical Studies; Michael Ott, Technical University Munich; Joanna Chiu, University of California, Davis; Damon Little, The New York Botanical Garden; and W. Richard McCombie, Cold Spring Harbor Laboratory.
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Contact: Kendra Snyder
ksnyder@amnh.org
212-496-3419
American Museum of Natural History
New York Plant Genomics Consortium maps evolutionary relationships, gene functions for 150 species
Scientists at the American Museum of Natural History, Cold Spring Harbor Laboratory, The New York Botanical Garden, and New York University have created the largest genome-based tree of life for seed plants to date. Their findings, published today in the journal PLoS Genetics, plot the evolutionary relationships of 150 different species of plants based on advanced genome-wide analysis of gene structure and function. This new approach, called "functional phylogenomics," allows scientists to reconstruct the pattern of events that led to the vast number of plant species and could help identify genes used to improve seed quality for agriculture.
"Ever since Darwin first described the 'abominable mystery' behind the rapid explosion of flowering plants in the fossil record, evolutionary biologists have been trying to understand the genetic and genomic basis of the astounding diversity of plant species," said Rob DeSalle, a corresponding author on the paper and a curator in the Museum's Division of Invertebrate Zoology who conducts research at the Sackler Institute for Comparative Genomics. "Having the architecture of this plant tree of life allows us to start to decipher some of the interesting aspects of evolutionary innovations that have occurred in this group."
The research, performed by members of the New York Plant Genomics Consortium, was funded by the National Science Foundation (NSF) Plant Genome Program to identify the genes that caused the evolution of seeds, a trait of important economic interest. The group selected 150 representative species from all of the major seed plant groups to include in the study. The species span from the flowering varietypeanuts and dandelions, for exampleto non-flowering cone plants like spruce and pine. The sequences of the plants' genomesall of the biological information needed to build and maintain an organism, encoded in DNAwere either culled from pre-existing databases or generated, in the field and at The New York Botanical Garden in the Bronx, from live specimens.
With new algorithms developed at the Museum and NYU and the processing power of supercomputers at Cold Spring Harbor Laboratory and overseas, the sequencesnearly 23,000 sets of genes (specific sections of DNA that code for certain proteins)were grouped, ordered, and organized in a tree according to their evolutionary relationships. Algorithms that determine similarities of biological processes were used to identify the genes underlying species diversity.
"Previously, phylogenetic trees were constructed from standard sets of genes and were used to identify the relationships of species," said Gloria Coruzzi, a professor in New York University's Center for Genomics and Systems Biology and the principal investigator of the NSF grant. "In our novel approach, we create the phylogeny based on all the genes in a genome, and then use the phylogeny to identify which genes provide positive support for the divergence of species."
The results support major hypotheses about evolutionary relationships in seed plants. The most interesting finding is that gnetophytes, a group that consists mostly of shrubs and woody vines, are the most primitive living non-flowering seed plantspresent since the late Mesozoic era, the "age of dinosaurs." They are situated at the base of the evolutionary tree of seed plants.
"This study resolves the long-standing problem of producing an unequivocal evolutionary tree of the seed plants," said Dennis Stevenson, vice president for laboratory research at The New York Botanical Garden. "We can then use this information to determine when and where important adaptations occur and how they relate to plant diversification. We also can examine the evolution of such features as drought tolerance, disease resistance, or crop yields that sustain human life through improved agriculture."
In addition, the researchers were able to make predictions about genes that caused the evolution of important plant characteristics. One such evolutionary signal is RNA interference, a process that cells use to turn down or silence the activity of specific genes. Based on their new phylogenomic maps, the researchers believe that RNA interference played a large role in the separation of monocotsplants that have a single seed leaf, including orchids, rice, and sugar canefrom other flowering plants. Even more surprising, RNA interference also played a major role in the emergence of flowering plants themselves.
"Genes required for the production of small RNA in seeds were at the very top of the list of genes responsible for the evolution of flowering plants from cone plants," said Rob Martienssen, a professor at Cold Spring Harbor Laboratory. "In collaboration with colleagues from LANGEBIO [Laboratorio Nacional de Genomica para la Biodiversidad] in Mexico last year, we found that these same genes control maternal reproduction, providing remarkable insight into the evolution of reproductive strategy in flowering plants."
The data and software resources generated by the researchers are publicly available and will allow other comparative genomic researchers to exploit plant diversity to identify genes associated with a trait of interest or agronomic value. These studies could have implications for improving the quality of seeds and, in turn, agricultural products ranging from food to clothing.
In addition, the phylogenomic approach used in this study could be applied to other groups of organisms to further explore how species originated, expanded, and diversified.
"The collaboration among the institutions involved here is a great example of how modern science works," said Sergios-Orestis Kolokotronis, a term assistant professor at Columbia University's Barnard College and a research associate at the Museum's Sackler Institute. "Each of the four institutions involved has its own strengths and these strengths were nicely interwoven to produce a novel vision of plant evolution."
###
Other authors include Ernest Lee, American Museum of Natural History; Angelica Cibrian-Jaramillo, American Museum of Natural History, The New York Botanical Garden, and New York University currently at the Laboratorio Nacional de Genomica para la Biodiversidad, Mexico; Manpreet Katari, New York University; Alexandros Stamatakis, Technical University Munich currently at Heidelberg Institute for Theoretical Studies; Michael Ott, Technical University Munich; Joanna Chiu, University of California, Davis; Damon Little, The New York Botanical Garden; and W. Richard McCombie, Cold Spring Harbor Laboratory.
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AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert! system.
Source: http://www.eurekalert.org/pub_releases/2011-12/amon-gto121511.php
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